BushMan

BushMan Chromatogram Assembly Manager

BushMan overview

BushMan is a web interface and a quality assurance tool for biological sequence assembly developed at SANBI.

It is a small application that helps process chromatograms, and assembles them using Phred and Phrap. It produces a FASTA formatted consensus sequence.

As part of the assembly process alignment counts are used to produce a report highlighting the quality of each chromatogram used in the assembly process, as well as providing Consed alignment coordinates to the user for easy reference to bad regions that might need resampling.

Online Version

To take the BushMan Assembly Manager for a test drive before installing it on a local server try our online version first.

Documentation

Detailed documentation and additional information can be found on our wiki page:

Caprisa Wiki Documentation

Download

The BushMan source code if freely available under the GPL license for download from the File Release Section or feel free to browse the SourceForge project page.

Bug Report and Support

For BushMan bug reports or support requests, please browse the BushMan SourceForge project page or Email us at

mid-admin(at)sanbi(dot)ac(dot)za

	BushMan Chromatogram Assembly Manager

	BushMan overview
	BushMan is a web interface and a quality assurance tool for biological sequence assembly developed at SANBI. It is a small application that helps process chromatograms, and assembles them using Phred and Phrap. It produces a FASTA formatted consensus sequence. As part of the assembly process alignment counts are used to produce a report highlighting the quality of each chromatogram used in the assembly process, as well as providing Consed alignment coordinates to the user for easy reference to bad regions that might need resampling.

	Online Version
	To take the BushMan Assembly Manager for a test drive before installing it on a local server try our online version first.

	Documentation
	Detailed documentation and additional information can be found on our wiki page: Caprisa Wiki Documentation

	Download
	The BushMan source code if freely available under the GPL license for download from the File Release Section or feel free to browse the SourceForge project page.

	Bug Report and Support
	For BushMan bug reports or support requests, please browse the BushMan SourceForge project page or Email us at mid-admin(at)sanbi(dot)ac(dot)za